Student Publications

MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD. Integration of biological networks and gene expression data using Cytoscape. Nat Protoc. 2007;2(10):2366-82.

Kerrien S, Orchard S, Montecchi-Palazzi L, Aranda B, Quinn AF, Vinod N, Bader GD, Xenarios I, Wojcik J, Sherman D, Tyers M, Salama JJ, Moore S, Ceol A, Chatr-Aryamontri A, Oesterheld M, Stümpflen V, Salwinski L, Nerothin J, Cerami E, Cusick ME, Vidal M, Gilson M, Armstrong J, Woollard P, Hogue C, Eisenberg D, Cesareni G, Apweiler R, Hermjakob H. Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions. BMC Biol. 2007 Oct 9;5:44.

Ingolfsson H.I., Koeppe R.E. II and Andersen O.S. Curcumin is a modulator of bilayer material properties. Biochemistry, 46, 10384-10391, (2007).

Adachi, S., Nagao, T., Ingolfsson, H.I., Maxfield, F.R., Andersen, O.S., Kopelovich, L., and Weinstein, I.B. The Inhibitory Effect of (-)-Epigallocatechin Gallate (EGCG) on Activation of the Epidermal Growth Factor Receptor is Associated With Altered Lipid Order in HT29 Colon Cancer Cells. Cancer Research, 67, 6493-501, (2007).

Ingolfsson, H. and Yona, G. Protein domain prediction. In Structural Proteomics - High-throughput Methods, edited by Guss, M., Huber, T., and Kobe, B. Humana Press (book chapter). (2007).

Ingolfsson H.I., Koeppe II, R.E., and Andersen, O.S. (-)-epigallocatechin-3-gallate (EGCG) is a potent modifier of gramicidin function. Biophys. J. Supplement, 578a, Abstract, 2760-Pos. (2007).

Ingolfsson, H.I., and Andersen, O.S. Curcumin is a modulator of bilayer mechanical properties. Biophys. J. Supplement, 364a, Abstract, 1768-Pos. (2006).

Ingolfsson H.I., and Andersen, O.S. Curcumin is a modulator of bilayer mechanical properties. EMBO, Cell membrane organization and dynamics, Bilbao, Spain (poster). (2006).

Ingolfsson H.I., and Andersen, O.S. Curcumin is a modulator of bilayer mechanical properties. Vincent DuVigneaud Research Symposium, New York, NY (poster). (2006).

Ralph Burkhardt , Eimear Kenny , Jennifer Lowe , Andrew Birkeland , Rebecca Josowitz , Martha Noel , Jacqueline Salit , Julian Maller , Itsik Pe'er , Mark Daly , David Altshuler , Markus Stoffel , Jeffrey Friedman, Jan Breslow Common SNPs in HMGCR in Micronesians and Caucasians associated with LDL-cholesterol levels affect alternative splicing of exon13 under submission, 2008. (paper)

Eimear Kenny, Merav Kedmi, Avi Orr-Urtreger, Itsik Pe'er Genetic Genomics of Late-onset Parkinson's Disease in Ashkenazi Jews C2B2/MAGNet Conference, Wave Hill, Bronx, April 2008. (abstract/poster)

Eimear Kenny, Noel M, Breslow J Whole-genome Association Analysis of Lipid Traits on an Isolated Population on the Island of Kosrae in the Federated States of Micronesia 12th annual PPG meeting NY, March 2007. (abstract/talk)

Katsutomo Okamura, Michael D Phillips, David M Tyler, Hong Duan, Yu-Ting Chou, Eric C Lai (2008). The regulatory activity of microRNA* species has substantial influence on microRNA and 3' UTR evolution. Nat Struct Mol Biol 15, 354-363.

Na Liu, Katsutomo Okamura, David M Tyler, Michael D Phillips, Wei-Jen Chung, Eric C Lai (2008). The evolution and functional diversification of animal microRNA genes. Cell Research, in press.